Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Usf1Q61069 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.46■□□□□ 0.39
Usf1Q61069 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
Usf1Q61069 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usf1Q61069 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usf1Q61069 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usf1Q61069 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Usf1Q61069 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.45■□□□□ 0.38
Usf1Q61069 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usf1Q61069 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Usf1Q61069 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Usf1Q61069 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usf1Q61069 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usf1Q61069 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Usf1Q61069 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
Usf1Q61069 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
Usf1Q61069 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usf1Q61069 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usf1Q61069 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.44■□□□□ 0.38
Usf1Q61069 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.44■□□□□ 0.38
Usf1Q61069 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.44■□□□□ 0.38
Usf1Q61069 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.44■□□□□ 0.38
Usf1Q61069 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usf1Q61069 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usf1Q61069 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usf1Q61069 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.43■□□□□ 0.38
Usf1Q61069 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.43■□□□□ 0.38
Usf1Q61069 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.43■□□□□ 0.38
Usf1Q61069 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.43■□□□□ 0.38
Usf1Q61069 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.43■□□□□ 0.38
Usf1Q61069 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.43■□□□□ 0.38
Usf1Q61069 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
Usf1Q61069 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usf1Q61069 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC17.42■□□□□ 0.38
Usf1Q61069 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Usf1Q61069 Gm715-201ENSMUST00000117865 831 ntBASIC17.42■□□□□ 0.38
Usf1Q61069 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.42■□□□□ 0.38
Usf1Q61069 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usf1Q61069 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usf1Q61069 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Usf1Q61069 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usf1Q61069 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usf1Q61069 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usf1Q61069 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usf1Q61069 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.41■□□□□ 0.38
Usf1Q61069 Dio3-201ENSMUST00000097228 1449 ntBASIC17.41■□□□□ 0.38
Usf1Q61069 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.41■□□□□ 0.38
Usf1Q61069 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Usf1Q61069 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.41■□□□□ 0.38
Usf1Q61069 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.41■□□□□ 0.38
Usf1Q61069 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usf1Q61069 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Usf1Q61069 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usf1Q61069 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
Usf1Q61069 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.4■□□□□ 0.38
Usf1Q61069 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Usf1Q61069 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Usf1Q61069 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.4■□□□□ 0.38
Usf1Q61069 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usf1Q61069 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Usf1Q61069 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usf1Q61069 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Usf1Q61069 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.39■□□□□ 0.37
Usf1Q61069 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.39■□□□□ 0.37
Usf1Q61069 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Usf1Q61069 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Usf1Q61069 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Usf1Q61069 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Usf1Q61069 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms