Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trav3-1Q5R1I8 Gm42922-201ENSMUST00000195887 2078 ntBASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trav3-1Q5R1I8 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Gm14026-201ENSMUST00000120625 1789 ntBASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Gm5913-201ENSMUST00000119397 1399 ntBASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-1Q5R1I8 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 AC164883.3-201ENSMUST00000227396 1774 ntBASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-1Q5R1I8 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Trav3-1Q5R1I8 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Gm7292-201ENSMUST00000194706 2527 ntBASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trav3-1Q5R1I8 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-1Q5R1I8 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Gm5987-201ENSMUST00000196433 1151 ntBASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC12.99□□□□□ -0.33
Trav3-1Q5R1I8 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms