Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Gm45417-201ENSMUST00000209533 758 ntBASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trav5d-4Q5R1F6 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC16.4■□□□□ 0.22
Trav5d-4Q5R1F6 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
Trav5d-4Q5R1F6 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Gm37352-201ENSMUST00000193908 2181 ntBASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav5d-4Q5R1F6 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Smad6-203ENSMUST00000179458 273 ntBASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Gm43173-201ENSMUST00000202246 593 ntBASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Golph3-205ENSMUST00000228671 2842 ntBASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
Trav5d-4Q5R1F6 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav5d-4Q5R1F6 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Gm11421-201ENSMUST00000122124 294 ntBASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC16.36■□□□□ 0.21
Trav5d-4Q5R1F6 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Gm6139-201ENSMUST00000079261 882 ntBASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trav5d-4Q5R1F6 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 194.4 ms