Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm7977-201ENSMUST00000193787 748 ntBASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 AC158538.1-201ENSMUST00000225870 294 ntBASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
Ccdc88bQ4QRL3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.64
Ccdc88bQ4QRL3 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
Ccdc88bQ4QRL3 Gm45640-201ENSMUST00000210665 1896 ntBASIC31.51■■■□□ 2.64
Ccdc88bQ4QRL3 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Hsf1-207ENSMUST00000228371 2102 ntBASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
Ccdc88bQ4QRL3 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Ccdc88bQ4QRL3 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
Ccdc88bQ4QRL3 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Ccdc88bQ4QRL3 Gm20760-201ENSMUST00000179197 648 ntBASIC31.5■■■□□ 2.63
Ccdc88bQ4QRL3 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ccdc88bQ4QRL3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ccdc88bQ4QRL3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 Rab3c-203ENSMUST00000224180 967 ntBASIC31.49■■■□□ 2.63
Ccdc88bQ4QRL3 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Ccdc88bQ4QRL3 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Ccdc88bQ4QRL3 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Ccdc88bQ4QRL3 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Ccdc88bQ4QRL3 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Ccdc88bQ4QRL3 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Ccdc88bQ4QRL3 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Ccdc88bQ4QRL3 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Ccdc88bQ4QRL3 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC31.45■■■□□ 2.62
Ccdc88bQ4QRL3 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC31.45■■■□□ 2.62
Ccdc88bQ4QRL3 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.62
Ccdc88bQ4QRL3 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
Ccdc88bQ4QRL3 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
Ccdc88bQ4QRL3 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC31.45■■■□□ 2.62
Ccdc88bQ4QRL3 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 Gm13509-201ENSMUST00000119733 1308 ntBASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 Gm44672-201ENSMUST00000206944 1098 ntBASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Ccdc88bQ4QRL3 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
Ccdc88bQ4QRL3 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
Ccdc88bQ4QRL3 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
Ccdc88bQ4QRL3 Gm27275-201ENSMUST00000184318 272 ntBASIC31.43■■■□□ 2.62
Ccdc88bQ4QRL3 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
Ccdc88bQ4QRL3 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Ccdc88bQ4QRL3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Ccdc88bQ4QRL3 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
Ccdc88bQ4QRL3 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
Ccdc88bQ4QRL3 Gm22240-201ENSMUST00000175225 82 ntBASIC31.41■■■□□ 2.62
Ccdc88bQ4QRL3 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Ccdc88bQ4QRL3 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Ccdc88bQ4QRL3 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Ccdc88bQ4QRL3 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC31.4■■■□□ 2.62
Ccdc88bQ4QRL3 AC135637.1-201ENSMUST00000227750 365 ntBASIC31.4■■■□□ 2.62
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms