Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3bQ3ULL6 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Gm9988-201ENSMUST00000069786 435 ntBASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Gm10493-201ENSMUST00000097270 612 ntBASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.42■□□□□ 0.86
Upf3bQ3ULL6 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3bQ3ULL6 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3bQ3ULL6 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.4■□□□□ 0.86
Upf3bQ3ULL6 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.4■□□□□ 0.86
Upf3bQ3ULL6 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3bQ3ULL6 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3bQ3ULL6 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Upf3bQ3ULL6 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Upf3bQ3ULL6 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Upf3bQ3ULL6 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Upf3bQ3ULL6 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Upf3bQ3ULL6 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Upf3bQ3ULL6 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Upf3bQ3ULL6 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Upf3bQ3ULL6 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Upf3bQ3ULL6 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Upf3bQ3ULL6 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms