Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Limch1Q3UH68 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC22.48■■□□□ 1.19
Limch1Q3UH68 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC22.48■■□□□ 1.19
Limch1Q3UH68 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Limch1Q3UH68 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Limch1Q3UH68 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Limch1Q3UH68 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC22.47■■□□□ 1.19
Limch1Q3UH68 AC165080.2-201ENSMUST00000217491 1530 ntBASIC22.47■■□□□ 1.19
Limch1Q3UH68 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
Limch1Q3UH68 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Limch1Q3UH68 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
Limch1Q3UH68 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Limch1Q3UH68 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Limch1Q3UH68 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Gm37179-201ENSMUST00000194862 823 ntBASIC22.45■■□□□ 1.18
Limch1Q3UH68 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Limch1Q3UH68 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
Limch1Q3UH68 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Limch1Q3UH68 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Limch1Q3UH68 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Limch1Q3UH68 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
Limch1Q3UH68 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Limch1Q3UH68 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
Limch1Q3UH68 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Limch1Q3UH68 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Limch1Q3UH68 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Limch1Q3UH68 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
Limch1Q3UH68 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Limch1Q3UH68 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Limch1Q3UH68 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
Limch1Q3UH68 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Limch1Q3UH68 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC22.41■■□□□ 1.18
Limch1Q3UH68 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Limch1Q3UH68 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
Limch1Q3UH68 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Limch1Q3UH68 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC22.41■■□□□ 1.18
Limch1Q3UH68 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Limch1Q3UH68 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Limch1Q3UH68 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Limch1Q3UH68 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Gm18671-201ENSMUST00000214826 683 ntBASIC22.4■■□□□ 1.18
Limch1Q3UH68 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Limch1Q3UH68 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms