Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Lig3P97386 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Lig3P97386 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Lig3P97386 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.71■□□□□ 0.91
Lig3P97386 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.71■□□□□ 0.91
Lig3P97386 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.71■□□□□ 0.91
Lig3P97386 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Lig3P97386 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Lig3P97386 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Lig3P97386 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig3P97386 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Lig3P97386 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.7■□□□□ 0.9
Lig3P97386 Gm22325-201ENSMUST00000158904 308 ntBASIC20.7■□□□□ 0.9
Lig3P97386 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Lig3P97386 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig3P97386 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Lig3P97386 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Lig3P97386 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Lig3P97386 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.69■□□□□ 0.9
Lig3P97386 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Gm22240-201ENSMUST00000175225 82 ntBASIC20.69■□□□□ 0.9
Lig3P97386 Gm10252-201ENSMUST00000209541 832 ntBASIC20.69■□□□□ 0.9
Lig3P97386 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Lig3P97386 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.69■□□□□ 0.9
Lig3P97386 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig3P97386 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig3P97386 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Lig3P97386 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.68■□□□□ 0.9
Lig3P97386 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig3P97386 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Lig3P97386 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.68■□□□□ 0.9
Lig3P97386 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Lig3P97386 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Lig3P97386 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Lig3P97386 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Lig3P97386 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lig3P97386 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.67■□□□□ 0.9
Lig3P97386 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lig3P97386 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.67■□□□□ 0.9
Lig3P97386 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Lig3P97386 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lig3P97386 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.67■□□□□ 0.9
Lig3P97386 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Lig3P97386 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig3P97386 Gm13234-201ENSMUST00000120010 747 ntBASIC20.66■□□□□ 0.9
Lig3P97386 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.66■□□□□ 0.9
Lig3P97386 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lig3P97386 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.66■□□□□ 0.9
Lig3P97386 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.66■□□□□ 0.9
Lig3P97386 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.66■□□□□ 0.9
Lig3P97386 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Lig3P97386 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Lig3P97386 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Lig3P97386 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.65■□□□□ 0.9
Lig3P97386 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.65■□□□□ 0.9
Lig3P97386 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Lig3P97386 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lig3P97386 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Lig3P97386 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig3P97386 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Lig3P97386 Gm20760-201ENSMUST00000179197 648 ntBASIC20.64■□□□□ 0.89
Lig3P97386 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig3P97386 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig3P97386 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Lig3P97386 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Lig3P97386 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.64■□□□□ 0.89
Lig3P97386 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig3P97386 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.63■□□□□ 0.89
Lig3P97386 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig3P97386 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.63■□□□□ 0.89
Lig3P97386 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig3P97386 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig3P97386 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Lig3P97386 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms