Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.25■□□□□ 0.51
Sox3P53784 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Sox3P53784 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC18.25■□□□□ 0.51
Sox3P53784 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox3P53784 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Sox3P53784 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.24■□□□□ 0.51
Sox3P53784 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.24■□□□□ 0.51
Sox3P53784 Mir5133-201ENSMUST00000174955 77 ntBASIC18.24■□□□□ 0.51
Sox3P53784 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.24■□□□□ 0.51
Sox3P53784 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Sox3P53784 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Sox3P53784 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Sox3P53784 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox3P53784 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.23■□□□□ 0.51
Sox3P53784 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox3P53784 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.23■□□□□ 0.51
Sox3P53784 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
Sox3P53784 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox3P53784 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Sox3P53784 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox3P53784 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox3P53784 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.23■□□□□ 0.51
Sox3P53784 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox3P53784 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Sox3P53784 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox3P53784 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox3P53784 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Sox3P53784 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox3P53784 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.22■□□□□ 0.51
Sox3P53784 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Sox3P53784 Gm27801-201ENSMUST00000184174 223 ntBASIC18.22■□□□□ 0.51
Sox3P53784 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Sox3P53784 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Sox3P53784 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.21■□□□□ 0.51
Sox3P53784 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.21■□□□□ 0.51
Sox3P53784 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.21■□□□□ 0.51
Sox3P53784 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Sox3P53784 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Sox3P53784 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.21■□□□□ 0.51
Sox3P53784 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Sox3P53784 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox3P53784 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox3P53784 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox3P53784 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox3P53784 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Sox3P53784 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox3P53784 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.2■□□□□ 0.5
Sox3P53784 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Sox3P53784 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Sox3P53784 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.19■□□□□ 0.5
Sox3P53784 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.19■□□□□ 0.5
Sox3P53784 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Sox3P53784 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.19■□□□□ 0.5
Sox3P53784 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.19■□□□□ 0.5
Sox3P53784 Gm7514-201ENSMUST00000209475 934 ntBASIC18.19■□□□□ 0.5
Sox3P53784 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Sox3P53784 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Sox3P53784 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.19■□□□□ 0.5
Sox3P53784 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Sox3P53784 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Sox3P53784 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms