Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt1P50431 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt1P50431 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Shmt1P50431 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt1P50431 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt1P50431 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Shmt1P50431 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Shmt1P50431 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt1P50431 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt1P50431 Gm37179-201ENSMUST00000194862 823 ntBASIC20.29■□□□□ 0.84
Shmt1P50431 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt1P50431 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Shmt1P50431 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt1P50431 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt1P50431 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.29■□□□□ 0.84
Shmt1P50431 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
Shmt1P50431 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.28■□□□□ 0.84
Shmt1P50431 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt1P50431 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt1P50431 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt1P50431 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt1P50431 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt1P50431 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt1P50431 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Shmt1P50431 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Shmt1P50431 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.28■□□□□ 0.84
Shmt1P50431 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.28■□□□□ 0.84
Shmt1P50431 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Shmt1P50431 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt1P50431 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Shmt1P50431 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.27■□□□□ 0.84
Shmt1P50431 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Shmt1P50431 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Shmt1P50431 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Shmt1P50431 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Shmt1P50431 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.27■□□□□ 0.84
Shmt1P50431 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Shmt1P50431 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.27■□□□□ 0.84
Shmt1P50431 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.27■□□□□ 0.84
Shmt1P50431 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.27■□□□□ 0.84
Shmt1P50431 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Shmt1P50431 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Shmt1P50431 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Shmt1P50431 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Shmt1P50431 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shmt1P50431 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Shmt1P50431 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shmt1P50431 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.26■□□□□ 0.83
Shmt1P50431 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shmt1P50431 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Shmt1P50431 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shmt1P50431 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Shmt1P50431 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shmt1P50431 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Shmt1P50431 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Shmt1P50431 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shmt1P50431 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shmt1P50431 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Shmt1P50431 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shmt1P50431 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.25■□□□□ 0.83
Shmt1P50431 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.25■□□□□ 0.83
Shmt1P50431 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC20.25■□□□□ 0.83
Shmt1P50431 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.25■□□□□ 0.83
Shmt1P50431 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shmt1P50431 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Shmt1P50431 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Shmt1P50431 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Shmt1P50431 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.24■□□□□ 0.83
Shmt1P50431 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shmt1P50431 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.23■□□□□ 0.83
Shmt1P50431 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shmt1P50431 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shmt1P50431 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shmt1P50431 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shmt1P50431 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Shmt1P50431 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shmt1P50431 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shmt1P50431 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Shmt1P50431 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shmt1P50431 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Shmt1P50431 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shmt1P50431 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Shmt1P50431 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shmt1P50431 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shmt1P50431 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.21■□□□□ 0.83
Shmt1P50431 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Shmt1P50431 Gm7514-201ENSMUST00000209475 934 ntBASIC20.21■□□□□ 0.83
Shmt1P50431 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms