Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Rfx3P48381 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfx3P48381 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Rfx3P48381 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 AA386476-201ENSMUST00000098781 1665 ntBASIC17.21■□□□□ 0.35
Rfx3P48381 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfx3P48381 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Rfx3P48381 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Rfx3P48381 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.2■□□□□ 0.34
Rfx3P48381 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfx3P48381 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Gm10209-201ENSMUST00000203397 1607 ntBASIC17.19■□□□□ 0.34
Rfx3P48381 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Rfx3P48381 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Rfx3P48381 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Gm5576-201ENSMUST00000075809 1236 ntBASIC17.19■□□□□ 0.34
Rfx3P48381 Gm13241-201ENSMUST00000094493 780 ntBASIC17.19■□□□□ 0.34
Rfx3P48381 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Rfx3P48381 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Rfx3P48381 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.19■□□□□ 0.34
Rfx3P48381 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfx3P48381 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC17.18■□□□□ 0.34
Rfx3P48381 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Rfx3P48381 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
Rfx3P48381 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfx3P48381 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Rfx3P48381 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfx3P48381 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfx3P48381 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.17■□□□□ 0.34
Rfx3P48381 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Rfx3P48381 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Rfx3P48381 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfx3P48381 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC17.17■□□□□ 0.34
Rfx3P48381 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC17.17■□□□□ 0.34
Rfx3P48381 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.17■□□□□ 0.34
Rfx3P48381 AC140930.3-201ENSMUST00000222935 274 ntBASIC17.17■□□□□ 0.34
Rfx3P48381 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Rfx3P48381 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfx3P48381 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfx3P48381 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfx3P48381 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.16■□□□□ 0.34
Rfx3P48381 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17.16■□□□□ 0.34
Rfx3P48381 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.16■□□□□ 0.34
Rfx3P48381 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Rfx3P48381 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
Rfx3P48381 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms