Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lmx1bO88609 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.32■□□□□ 0.36
Lmx1bO88609 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.32■□□□□ 0.36
Lmx1bO88609 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lmx1bO88609 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC17.32■□□□□ 0.36
Lmx1bO88609 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.32■□□□□ 0.36
Lmx1bO88609 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.32■□□□□ 0.36
Lmx1bO88609 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Lmx1bO88609 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lmx1bO88609 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lmx1bO88609 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lmx1bO88609 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lmx1bO88609 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
Lmx1bO88609 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.31■□□□□ 0.36
Lmx1bO88609 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Lmx1bO88609 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lmx1bO88609 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lmx1bO88609 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lmx1bO88609 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.3■□□□□ 0.36
Lmx1bO88609 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
Lmx1bO88609 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.3■□□□□ 0.36
Lmx1bO88609 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.3■□□□□ 0.36
Lmx1bO88609 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.3■□□□□ 0.36
Lmx1bO88609 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lmx1bO88609 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.29■□□□□ 0.36
Lmx1bO88609 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Lmx1bO88609 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC17.29■□□□□ 0.36
Lmx1bO88609 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.29■□□□□ 0.36
Lmx1bO88609 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Lmx1bO88609 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.29■□□□□ 0.36
Lmx1bO88609 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Lmx1bO88609 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.28■□□□□ 0.36
Lmx1bO88609 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.28■□□□□ 0.36
Lmx1bO88609 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 Gm10616-201ENSMUST00000205285 2127 ntBASIC17.28■□□□□ 0.36
Lmx1bO88609 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.28■□□□□ 0.36
Lmx1bO88609 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Lmx1bO88609 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lmx1bO88609 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Lmx1bO88609 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lmx1bO88609 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lmx1bO88609 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.27■□□□□ 0.36
Lmx1bO88609 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.27■□□□□ 0.36
Lmx1bO88609 Gm7514-201ENSMUST00000209475 934 ntBASIC17.27■□□□□ 0.36
Lmx1bO88609 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Lmx1bO88609 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lmx1bO88609 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lmx1bO88609 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lmx1bO88609 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Lmx1bO88609 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.26■□□□□ 0.35
Lmx1bO88609 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.26■□□□□ 0.35
Lmx1bO88609 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Lmx1bO88609 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lmx1bO88609 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lmx1bO88609 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Lmx1bO88609 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Lmx1bO88609 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Lmx1bO88609 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.25■□□□□ 0.35
Lmx1bO88609 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lmx1bO88609 Gm38205-201ENSMUST00000192243 258 ntBASIC17.25■□□□□ 0.35
Lmx1bO88609 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lmx1bO88609 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lmx1bO88609 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.25■□□□□ 0.35
Lmx1bO88609 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lmx1bO88609 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms