Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Prom1O54990 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.22■□□□□ 0.99
Prom1O54990 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC21.22■□□□□ 0.99
Prom1O54990 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
Prom1O54990 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prom1O54990 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prom1O54990 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prom1O54990 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC21.22■□□□□ 0.99
Prom1O54990 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Prom1O54990 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Prom1O54990 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC21.21■□□□□ 0.99
Prom1O54990 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Prom1O54990 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.21■□□□□ 0.99
Prom1O54990 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Gm27275-201ENSMUST00000184318 272 ntBASIC21.21■□□□□ 0.99
Prom1O54990 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Prom1O54990 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.21■□□□□ 0.99
Prom1O54990 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Prom1O54990 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.2■□□□□ 0.98
Prom1O54990 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
Prom1O54990 Trmt13-210ENSMUST00000198454 880 ntBASIC21.2■□□□□ 0.98
Prom1O54990 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.2■□□□□ 0.98
Prom1O54990 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prom1O54990 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Prom1O54990 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prom1O54990 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prom1O54990 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Prom1O54990 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prom1O54990 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Prom1O54990 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.19■□□□□ 0.98
Prom1O54990 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.19■□□□□ 0.98
Prom1O54990 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.19■□□□□ 0.98
Prom1O54990 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Prom1O54990 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Prom1O54990 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.19■□□□□ 0.98
Prom1O54990 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC21.18■□□□□ 0.98
Prom1O54990 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Prom1O54990 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prom1O54990 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prom1O54990 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Prom1O54990 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Prom1O54990 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC21.17■□□□□ 0.98
Prom1O54990 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Prom1O54990 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Prom1O54990 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Prom1O54990 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
Prom1O54990 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Rab3c-203ENSMUST00000224180 967 ntBASIC21.16■□□□□ 0.98
Prom1O54990 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Prom1O54990 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
Prom1O54990 Gm13509-201ENSMUST00000119733 1308 ntBASIC21.15■□□□□ 0.98
Prom1O54990 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Prom1O54990 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Prom1O54990 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Prom1O54990 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Prom1O54990 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Prom1O54990 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Prom1O54990 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Prom1O54990 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Prom1O54990 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Prom1O54990 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Prom1O54990 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prom1O54990 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Prom1O54990 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.14■□□□□ 0.97
Prom1O54990 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Prom1O54990 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prom1O54990 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prom1O54990 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Prom1O54990 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prom1O54990 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Prom1O54990 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Prom1O54990 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms