Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Pcdhgb8A0A140LI48 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Pcdhgb8A0A140LI48 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Pcdhgb8A0A140LI48 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Gm6139-201ENSMUST00000079261 882 ntBASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Pcdhgb8A0A140LI48 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
Pcdhgb8A0A140LI48 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Pcdhgb8A0A140LI48 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
Pcdhgb8A0A140LI48 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Mir7075-201ENSMUST00000184187 82 ntBASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Pcdhgb8A0A140LI48 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Pcdhgb8A0A140LI48 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Wdr70-203ENSMUST00000227371 1130 ntBASIC17.12■□□□□ 0.33
Pcdhgb8A0A140LI48 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms