Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Trav11A0A0B4J1J9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Gm42900-201ENSMUST00000197184 2167 ntBASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Gm9954-202ENSMUST00000198686 4725 ntBASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Trav11A0A0B4J1J9 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Trav11A0A0B4J1J9 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Gm9870-201ENSMUST00000063874 645 ntBASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav11A0A0B4J1J9 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC13.08□□□□□ -0.31
Trav11A0A0B4J1J9 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Trav11A0A0B4J1J9 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trav11A0A0B4J1J9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trav11A0A0B4J1J9 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trav11A0A0B4J1J9 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC13.08□□□□□ -0.32
Trav11A0A0B4J1J9 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav11A0A0B4J1J9 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav11A0A0B4J1J9 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav11A0A0B4J1J9 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Trav11A0A0B4J1J9 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav11A0A0B4J1J9 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms