Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Rnf43Q5NCP0 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Rnf43Q5NCP0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Rnf43Q5NCP0 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
Rnf43Q5NCP0 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC26.27■■□□□ 1.8
Rnf43Q5NCP0 Gm5987-201ENSMUST00000196433 1151 ntBASIC26.27■■□□□ 1.8
Rnf43Q5NCP0 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Rnf43Q5NCP0 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Rnf43Q5NCP0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
Rnf43Q5NCP0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Rnf43Q5NCP0 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC26.24■■□□□ 1.79
Rnf43Q5NCP0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Rnf43Q5NCP0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Rnf43Q5NCP0 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Rnf43Q5NCP0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Rnf43Q5NCP0 Gm8503-201ENSMUST00000118131 455 ntBASIC26.17■■□□□ 1.78
Rnf43Q5NCP0 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Rnf43Q5NCP0 Gm9939-201ENSMUST00000067161 1154 ntBASIC26.17■■□□□ 1.78
Rnf43Q5NCP0 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Rnf43Q5NCP0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Rnf43Q5NCP0 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC26.12■■□□□ 1.77
Rnf43Q5NCP0 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
Rnf43Q5NCP0 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.12■■□□□ 1.77
Rnf43Q5NCP0 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
Rnf43Q5NCP0 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.1■■□□□ 1.77
Rnf43Q5NCP0 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Rnf43Q5NCP0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
Rnf43Q5NCP0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Rnf43Q5NCP0 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Rnf43Q5NCP0 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.04■■□□□ 1.76
Rnf43Q5NCP0 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Rnf43Q5NCP0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.04■■□□□ 1.76
Rnf43Q5NCP0 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Rnf43Q5NCP0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
Rnf43Q5NCP0 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Rnf43Q5NCP0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
Rnf43Q5NCP0 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC26.01■■□□□ 1.75
Rnf43Q5NCP0 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Rnf43Q5NCP0 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Rnf43Q5NCP0 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC26■■□□□ 1.75
Rnf43Q5NCP0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Rnf43Q5NCP0 Gm6821-201ENSMUST00000107540 542 ntBASIC25.98■■□□□ 1.75
Rnf43Q5NCP0 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
Rnf43Q5NCP0 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
Rnf43Q5NCP0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Rnf43Q5NCP0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC25.96■■□□□ 1.75
Rnf43Q5NCP0 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC25.96■■□□□ 1.75
Rnf43Q5NCP0 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
Rnf43Q5NCP0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Rnf43Q5NCP0 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Rnf43Q5NCP0 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Rnf43Q5NCP0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
Rnf43Q5NCP0 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
Rnf43Q5NCP0 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Rnf43Q5NCP0 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Rnf43Q5NCP0 AC157572.2-201ENSMUST00000226970 908 ntBASIC25.91■■□□□ 1.74
Rnf43Q5NCP0 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Rnf43Q5NCP0 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Rnf43Q5NCP0 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Rnf43Q5NCP0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
Rnf43Q5NCP0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Rnf43Q5NCP0 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
Rnf43Q5NCP0 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Rnf43Q5NCP0 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Rnf43Q5NCP0 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Rnf43Q5NCP0 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC25.84■■□□□ 1.73
Rnf43Q5NCP0 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Rnf43Q5NCP0 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC25.83■■□□□ 1.73
Rnf43Q5NCP0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Rnf43Q5NCP0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC25.83■■□□□ 1.73
Rnf43Q5NCP0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
Rnf43Q5NCP0 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Rnf43Q5NCP0 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Rnf43Q5NCP0 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
Rnf43Q5NCP0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Rnf43Q5NCP0 Gm42809-201ENSMUST00000198429 1138 ntBASIC25.77■■□□□ 1.72
Rnf43Q5NCP0 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Rnf43Q5NCP0 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Rnf43Q5NCP0 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC25.75■■□□□ 1.71
Rnf43Q5NCP0 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC25.75■■□□□ 1.71
Rnf43Q5NCP0 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
Rnf43Q5NCP0 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
Rnf43Q5NCP0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Rnf43Q5NCP0 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Rnf43Q5NCP0 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Rnf43Q5NCP0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
Rnf43Q5NCP0 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Rnf43Q5NCP0 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC25.7■■□□□ 1.7
Rnf43Q5NCP0 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Rnf43Q5NCP0 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Rnf43Q5NCP0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC25.69■■□□□ 1.7
Rnf43Q5NCP0 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Rnf43Q5NCP0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Rnf43Q5NCP0 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
Rnf43Q5NCP0 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Rnf43Q5NCP0 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC25.64■■□□□ 1.7
Rnf43Q5NCP0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
Rnf43Q5NCP0 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Rnf43Q5NCP0 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Rnf43Q5NCP0 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms