Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Tnfsf11O35235 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Tnfsf11O35235 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Tnfsf11O35235 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Tnfsf11O35235 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC19.61■□□□□ 0.73
Tnfsf11O35235 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Tnfsf11O35235 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
Tnfsf11O35235 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Tnfsf11O35235 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Tnfsf11O35235 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.59■□□□□ 0.73
Tnfsf11O35235 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Tnfsf11O35235 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Tnfsf11O35235 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Tnfsf11O35235 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Tnfsf11O35235 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Tnfsf11O35235 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Tnfsf11O35235 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Tnfsf11O35235 AL845457.1-201ENSMUST00000197244 68 ntBASIC19.53■□□□□ 0.72
Tnfsf11O35235 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Tnfsf11O35235 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Tnfsf11O35235 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Tnfsf11O35235 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Tnfsf11O35235 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Tnfsf11O35235 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Tnfsf11O35235 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Tnfsf11O35235 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Tnfsf11O35235 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Tnfsf11O35235 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Tnfsf11O35235 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC19.48■□□□□ 0.71
Tnfsf11O35235 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Tnfsf11O35235 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Tnfsf11O35235 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Tnfsf11O35235 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Tnfsf11O35235 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Tnfsf11O35235 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.47■□□□□ 0.71
Tnfsf11O35235 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Tnfsf11O35235 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Tnfsf11O35235 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Tnfsf11O35235 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Tnfsf11O35235 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Tnfsf11O35235 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Tnfsf11O35235 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Tnfsf11O35235 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC19.42■□□□□ 0.7
Tnfsf11O35235 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Tnfsf11O35235 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.41■□□□□ 0.7
Tnfsf11O35235 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Tnfsf11O35235 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Tnfsf11O35235 Gm6345-201ENSMUST00000180378 1691 ntBASIC19.4■□□□□ 0.7
Tnfsf11O35235 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Tnfsf11O35235 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Tnfsf11O35235 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Tnfsf11O35235 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC19.39■□□□□ 0.7
Tnfsf11O35235 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC19.38■□□□□ 0.69
Tnfsf11O35235 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tnfsf11O35235 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Tnfsf11O35235 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tnfsf11O35235 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tnfsf11O35235 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tnfsf11O35235 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tnfsf11O35235 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tnfsf11O35235 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tnfsf11O35235 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tnfsf11O35235 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Tnfsf11O35235 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tnfsf11O35235 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Tnfsf11O35235 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tnfsf11O35235 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tnfsf11O35235 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tnfsf11O35235 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Tnfsf11O35235 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Tnfsf11O35235 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Tnfsf11O35235 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Tnfsf11O35235 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Tnfsf11O35235 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Tnfsf11O35235 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Tnfsf11O35235 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Tnfsf11O35235 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Tnfsf11O35235 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Tnfsf11O35235 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Tnfsf11O35235 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.28■□□□□ 0.68
Tnfsf11O35235 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tnfsf11O35235 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tnfsf11O35235 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC19.27■□□□□ 0.68
Tnfsf11O35235 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Tnfsf11O35235 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tnfsf11O35235 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tnfsf11O35235 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Tnfsf11O35235 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Tnfsf11O35235 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tnfsf11O35235 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tnfsf11O35235 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tnfsf11O35235 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Tnfsf11O35235 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Tnfsf11O35235 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Tnfsf11O35235 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Tnfsf11O35235 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Tnfsf11O35235 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Tnfsf11O35235 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tnfsf11O35235 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Tnfsf11O35235 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 9.4 ms