Protein–RNA interactions for Protein: Q9Z0S7

Cldn9, Claudin-9, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn9Q9Z0S7 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cldn9Q9Z0S7 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cldn9Q9Z0S7 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cldn9Q9Z0S7 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Smad6-203ENSMUST00000179458 273 ntBASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Cldn9Q9Z0S7 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Gm43173-201ENSMUST00000202246 593 ntBASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Cldn9Q9Z0S7 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Cldn9Q9Z0S7 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Gm11421-201ENSMUST00000122124 294 ntBASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cldn9Q9Z0S7 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.41■□□□□ 0.54
Cldn9Q9Z0S7 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cldn9Q9Z0S7 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Cldn9Q9Z0S7 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Cldn9Q9Z0S7 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Gm6139-201ENSMUST00000079261 882 ntBASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cldn9Q9Z0S7 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Gm45417-201ENSMUST00000209533 758 ntBASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Cldn9Q9Z0S7 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cldn9Q9Z0S7 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
Cldn9Q9Z0S7 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cldn9Q9Z0S7 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.37■□□□□ 0.53
Cldn9Q9Z0S7 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms