Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Vps39Q8R5L3 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Gm43137-201ENSMUST00000198052 594 ntBASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Spcs1-204ENSMUST00000226782 949 ntBASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Gm13241-201ENSMUST00000094493 780 ntBASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Vps39Q8R5L3 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.18■□□□□ 0.66
Vps39Q8R5L3 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
Vps39Q8R5L3 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Vps39Q8R5L3 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
Vps39Q8R5L3 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.14■□□□□ 0.66
Vps39Q8R5L3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps39Q8R5L3 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps39Q8R5L3 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps39Q8R5L3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.11■□□□□ 0.65
Vps39Q8R5L3 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps39Q8R5L3 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps39Q8R5L3 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
Vps39Q8R5L3 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps39Q8R5L3 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps39Q8R5L3 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps39Q8R5L3 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.11■□□□□ 0.65
Vps39Q8R5L3 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms