Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Ushbp1Q8R370 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Iqck-206ENSMUST00000208658 2891 ntBASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ushbp1Q8R370 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Ushbp1Q8R370 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Smad6-203ENSMUST00000179458 273 ntBASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Gm18671-201ENSMUST00000214826 683 ntBASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ushbp1Q8R370 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ushbp1Q8R370 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ushbp1Q8R370 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ushbp1Q8R370 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ushbp1Q8R370 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Ushbp1Q8R370 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ushbp1Q8R370 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Ushbp1Q8R370 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ushbp1Q8R370 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Ushbp1Q8R370 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ushbp1Q8R370 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ushbp1Q8R370 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.47■■□□□ 1.03
Ushbp1Q8R370 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ushbp1Q8R370 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ushbp1Q8R370 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ushbp1Q8R370 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ushbp1Q8R370 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ushbp1Q8R370 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.45■■□□□ 1.02
Ushbp1Q8R370 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ushbp1Q8R370 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.45■■□□□ 1.02
Ushbp1Q8R370 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Ushbp1Q8R370 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ushbp1Q8R370 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Ushbp1Q8R370 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 AV356131-201ENSMUST00000206201 750 ntBASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Ushbp1Q8R370 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms