Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cchcr1Q8K2I2 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Gm37352-201ENSMUST00000193908 2181 ntBASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Cchcr1Q8K2I2 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cchcr1Q8K2I2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cchcr1Q8K2I2 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cchcr1Q8K2I2 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
Cchcr1Q8K2I2 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cchcr1Q8K2I2 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cchcr1Q8K2I2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Cchcr1Q8K2I2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cchcr1Q8K2I2 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
Cchcr1Q8K2I2 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
Cchcr1Q8K2I2 Gm18688-201ENSMUST00000204695 1859 ntBASIC22.63■■□□□ 1.21
Cchcr1Q8K2I2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cchcr1Q8K2I2 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Cchcr1Q8K2I2 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC22.63■■□□□ 1.21
Cchcr1Q8K2I2 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cchcr1Q8K2I2 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Cchcr1Q8K2I2 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Gm5784-201ENSMUST00000179344 2478 ntBASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cchcr1Q8K2I2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Cchcr1Q8K2I2 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Gm12251-201ENSMUST00000117893 792 ntBASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cchcr1Q8K2I2 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 Gm21956-201ENSMUST00000179946 522 ntBASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC22.58■■□□□ 1.21
Cchcr1Q8K2I2 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
Cchcr1Q8K2I2 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Cchcr1Q8K2I2 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Cchcr1Q8K2I2 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms