Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Syne4Q8CII8 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.89■■□□□ 1.09
Syne4Q8CII8 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Arhgef33-211ENSMUST00000225658 473 ntBASIC21.89■■□□□ 1.09
Syne4Q8CII8 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.09
Syne4Q8CII8 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Syne4Q8CII8 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Syne4Q8CII8 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Gm6576-201ENSMUST00000169678 883 ntBASIC21.87■■□□□ 1.09
Syne4Q8CII8 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
Syne4Q8CII8 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Syne4Q8CII8 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Syne4Q8CII8 Gm2559-201ENSMUST00000201323 363 ntBASIC21.86■■□□□ 1.09
Syne4Q8CII8 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Syne4Q8CII8 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Syne4Q8CII8 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Syne4Q8CII8 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Syne4Q8CII8 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Syne4Q8CII8 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Syne4Q8CII8 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Syne4Q8CII8 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC21.85■■□□□ 1.09
Syne4Q8CII8 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Syne4Q8CII8 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Syne4Q8CII8 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Syne4Q8CII8 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
Syne4Q8CII8 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.85■■□□□ 1.09
Syne4Q8CII8 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
Syne4Q8CII8 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Syne4Q8CII8 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Syne4Q8CII8 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Syne4Q8CII8 Gm13836-201ENSMUST00000121159 501 ntBASIC21.84■■□□□ 1.09
Syne4Q8CII8 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Syne4Q8CII8 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Syne4Q8CII8 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
Syne4Q8CII8 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
Syne4Q8CII8 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Syne4Q8CII8 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
Syne4Q8CII8 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Syne4Q8CII8 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Syne4Q8CII8 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.81■■□□□ 1.08
Syne4Q8CII8 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Syne4Q8CII8 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Syne4Q8CII8 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.8■■□□□ 1.08
Syne4Q8CII8 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Syne4Q8CII8 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
Syne4Q8CII8 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Syne4Q8CII8 AL672049.1-201ENSMUST00000197943 91 ntBASIC21.79■■□□□ 1.08
Syne4Q8CII8 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms