Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.94■□□□□ 0.62
Ccdc28bQ8CEG5 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc28bQ8CEG5 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Gm9870-201ENSMUST00000063874 645 ntBASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc28bQ8CEG5 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc28bQ8CEG5 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Cap2-205ENSMUST00000225824 1634 ntBASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Ccdc28bQ8CEG5 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ccdc28bQ8CEG5 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 AA386476-201ENSMUST00000098781 1665 ntBASIC18.89■□□□□ 0.61
Ccdc28bQ8CEG5 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ccdc28bQ8CEG5 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc28bQ8CEG5 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Ccdc28bQ8CEG5 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc28bQ8CEG5 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc28bQ8CEG5 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
Ccdc28bQ8CEG5 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ccdc28bQ8CEG5 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 368.7 ms