Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shkbp1Q6P7W2 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Shkbp1Q6P7W2 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shkbp1Q6P7W2 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Shkbp1Q6P7W2 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Shkbp1Q6P7W2 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Gm20760-201ENSMUST00000179197 648 ntBASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Shkbp1Q6P7W2 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Gm20049-201ENSMUST00000219950 730 ntBASIC20.08■□□□□ 0.81
Shkbp1Q6P7W2 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.08■□□□□ 0.8
Shkbp1Q6P7W2 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Shkbp1Q6P7W2 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
Shkbp1Q6P7W2 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.07■□□□□ 0.8
Shkbp1Q6P7W2 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Shkbp1Q6P7W2 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Gm26524-201ENSMUST00000192339 390 ntBASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Shkbp1Q6P7W2 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Shkbp1Q6P7W2 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Shkbp1Q6P7W2 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.02■□□□□ 0.8
Shkbp1Q6P7W2 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Shkbp1Q6P7W2 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms