Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Ift88Q61371 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Ift88Q61371 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.22■□□□□ 0.99
Ift88Q61371 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ift88Q61371 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.21■□□□□ 0.99
Ift88Q61371 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ift88Q61371 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.21■□□□□ 0.99
Ift88Q61371 Rps24-207ENSMUST00000224568 714 ntBASIC21.21■□□□□ 0.99
Ift88Q61371 Serp2-204ENSMUST00000228055 705 ntBASIC21.21■□□□□ 0.99
Ift88Q61371 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ift88Q61371 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Ift88Q61371 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ift88Q61371 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ift88Q61371 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.21■□□□□ 0.99
Ift88Q61371 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ift88Q61371 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ift88Q61371 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Ift88Q61371 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ift88Q61371 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ift88Q61371 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Ift88Q61371 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.2■□□□□ 0.98
Ift88Q61371 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ift88Q61371 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ift88Q61371 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ift88Q61371 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ift88Q61371 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.19■□□□□ 0.98
Ift88Q61371 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.19■□□□□ 0.98
Ift88Q61371 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.19■□□□□ 0.98
Ift88Q61371 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC21.19■□□□□ 0.98
Ift88Q61371 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC21.19■□□□□ 0.98
Ift88Q61371 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC21.19■□□□□ 0.98
Ift88Q61371 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ift88Q61371 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ift88Q61371 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ift88Q61371 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Ift88Q61371 Golgb1-201ENSMUST00000023534 498 ntBASIC21.18■□□□□ 0.98
Ift88Q61371 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ift88Q61371 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ift88Q61371 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Ift88Q61371 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ift88Q61371 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.17■□□□□ 0.98
Ift88Q61371 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.17■□□□□ 0.98
Ift88Q61371 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ift88Q61371 Dapk1-207ENSMUST00000226059 5009 ntBASIC21.16■□□□□ 0.98
Ift88Q61371 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ift88Q61371 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ift88Q61371 Rncr4-201ENSMUST00000194541 2234 ntBASIC21.16■□□□□ 0.98
Ift88Q61371 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ift88Q61371 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ift88Q61371 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC21.16■□□□□ 0.98
Ift88Q61371 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ift88Q61371 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
Ift88Q61371 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ift88Q61371 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ift88Q61371 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ift88Q61371 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ift88Q61371 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ift88Q61371 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ift88Q61371 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Ift88Q61371 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
Ift88Q61371 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ift88Q61371 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Ift88Q61371 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ift88Q61371 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ift88Q61371 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ift88Q61371 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ift88Q61371 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ift88Q61371 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ift88Q61371 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ift88Q61371 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ift88Q61371 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
Ift88Q61371 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ift88Q61371 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ift88Q61371 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms