Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Six4Q61321 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Six4Q61321 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.45■□□□□ 0.7
Six4Q61321 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Six4Q61321 Gm10129-202ENSMUST00000193100 1316 ntBASIC19.45■□□□□ 0.7
Six4Q61321 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Six4Q61321 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Six4Q61321 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Six4Q61321 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.44■□□□□ 0.7
Six4Q61321 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Six4Q61321 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Six4Q61321 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Six4Q61321 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
Six4Q61321 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Six4Q61321 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.43■□□□□ 0.7
Six4Q61321 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Six4Q61321 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Six4Q61321 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.43■□□□□ 0.7
Six4Q61321 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Six4Q61321 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.43■□□□□ 0.7
Six4Q61321 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.43■□□□□ 0.7
Six4Q61321 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Six4Q61321 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.43■□□□□ 0.7
Six4Q61321 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Six4Q61321 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Six4Q61321 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Six4Q61321 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC19.42■□□□□ 0.7
Six4Q61321 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Six4Q61321 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Six4Q61321 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Six4Q61321 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Six4Q61321 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Six4Q61321 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Six4Q61321 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.42■□□□□ 0.7
Six4Q61321 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Six4Q61321 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Six4Q61321 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.42■□□□□ 0.7
Six4Q61321 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Six4Q61321 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Six4Q61321 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Six4Q61321 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Six4Q61321 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Six4Q61321 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.41■□□□□ 0.7
Six4Q61321 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Six4Q61321 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Six4Q61321 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Six4Q61321 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
Six4Q61321 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Six4Q61321 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.4■□□□□ 0.7
Six4Q61321 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
Six4Q61321 Gm9988-201ENSMUST00000069786 435 ntBASIC19.4■□□□□ 0.7
Six4Q61321 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Six4Q61321 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
Six4Q61321 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Six4Q61321 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
Six4Q61321 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Gm7860-201ENSMUST00000121190 879 ntBASIC19.39■□□□□ 0.69
Six4Q61321 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
Six4Q61321 Gm38205-201ENSMUST00000192243 258 ntBASIC19.39■□□□□ 0.69
Six4Q61321 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Six4Q61321 Gm10493-201ENSMUST00000097270 612 ntBASIC19.39■□□□□ 0.69
Six4Q61321 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Six4Q61321 Reep4-203ENSMUST00000226563 1444 ntBASIC19.39■□□□□ 0.69
Six4Q61321 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Six4Q61321 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Six4Q61321 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.38■□□□□ 0.69
Six4Q61321 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Six4Q61321 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Six4Q61321 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.38■□□□□ 0.69
Six4Q61321 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Six4Q61321 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Six4Q61321 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Six4Q61321 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Six4Q61321 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Six4Q61321 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Six4Q61321 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Six4Q61321 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Six4Q61321 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.37■□□□□ 0.69
Six4Q61321 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Six4Q61321 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Six4Q61321 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Six4Q61321 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Six4Q61321 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Six4Q61321 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Six4Q61321 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.37■□□□□ 0.69
Six4Q61321 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms