Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Usf1Q61069 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Usf1Q61069 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Usf1Q61069 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usf1Q61069 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Usf1Q61069 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.53■□□□□ 0.4
Usf1Q61069 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.53■□□□□ 0.4
Usf1Q61069 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
Usf1Q61069 Gm5643-201ENSMUST00000117081 966 ntBASIC17.53■□□□□ 0.4
Usf1Q61069 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.53■□□□□ 0.4
Usf1Q61069 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC17.53■□□□□ 0.4
Usf1Q61069 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usf1Q61069 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.52■□□□□ 0.4
Usf1Q61069 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Usf1Q61069 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.52■□□□□ 0.4
Usf1Q61069 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usf1Q61069 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Usf1Q61069 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.52■□□□□ 0.39
Usf1Q61069 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Usf1Q61069 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.51■□□□□ 0.39
Usf1Q61069 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.51■□□□□ 0.39
Usf1Q61069 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Usf1Q61069 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Usf1Q61069 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Usf1Q61069 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Usf1Q61069 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC17.5■□□□□ 0.39
Usf1Q61069 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usf1Q61069 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Usf1Q61069 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Usf1Q61069 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.5■□□□□ 0.39
Usf1Q61069 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Usf1Q61069 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Usf1Q61069 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usf1Q61069 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.49■□□□□ 0.39
Usf1Q61069 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usf1Q61069 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Usf1Q61069 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usf1Q61069 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usf1Q61069 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Usf1Q61069 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Usf1Q61069 Gm2559-201ENSMUST00000201323 363 ntBASIC17.49■□□□□ 0.39
Usf1Q61069 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Usf1Q61069 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usf1Q61069 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Usf1Q61069 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Usf1Q61069 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usf1Q61069 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usf1Q61069 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.48■□□□□ 0.39
Usf1Q61069 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usf1Q61069 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
Usf1Q61069 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Usf1Q61069 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usf1Q61069 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Usf1Q61069 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usf1Q61069 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Usf1Q61069 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC17.48■□□□□ 0.39
Usf1Q61069 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usf1Q61069 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usf1Q61069 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usf1Q61069 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usf1Q61069 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
Usf1Q61069 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.47■□□□□ 0.39
Usf1Q61069 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.47■□□□□ 0.39
Usf1Q61069 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Usf1Q61069 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.47■□□□□ 0.39
Usf1Q61069 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usf1Q61069 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Usf1Q61069 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Usf1Q61069 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Usf1Q61069 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Usf1Q61069 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Usf1Q61069 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms