Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Gm8495-201ENSMUST00000188740 694 ntBASIC18.38■□□□□ 0.53
ClpbQ60649 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.38■□□□□ 0.53
ClpbQ60649 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
ClpbQ60649 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ClpbQ60649 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ClpbQ60649 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.37■□□□□ 0.53
ClpbQ60649 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ClpbQ60649 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ClpbQ60649 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ClpbQ60649 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.36■□□□□ 0.53
ClpbQ60649 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ClpbQ60649 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18.36■□□□□ 0.53
ClpbQ60649 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC18.36■□□□□ 0.53
ClpbQ60649 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ClpbQ60649 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ClpbQ60649 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ClpbQ60649 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ClpbQ60649 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ClpbQ60649 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ClpbQ60649 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
ClpbQ60649 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ClpbQ60649 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.35■□□□□ 0.53
ClpbQ60649 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ClpbQ60649 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ClpbQ60649 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ClpbQ60649 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ClpbQ60649 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
ClpbQ60649 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.34■□□□□ 0.53
ClpbQ60649 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
ClpbQ60649 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ClpbQ60649 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.34■□□□□ 0.53
ClpbQ60649 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
ClpbQ60649 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.33■□□□□ 0.53
ClpbQ60649 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
ClpbQ60649 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.33■□□□□ 0.52
ClpbQ60649 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
ClpbQ60649 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
ClpbQ60649 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ClpbQ60649 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ClpbQ60649 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.33■□□□□ 0.52
ClpbQ60649 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 Gm5874-201ENSMUST00000096101 508 ntBASIC18.32■□□□□ 0.52
ClpbQ60649 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ClpbQ60649 AA386476-201ENSMUST00000098781 1665 ntBASIC18.31■□□□□ 0.52
ClpbQ60649 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ClpbQ60649 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ClpbQ60649 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ClpbQ60649 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ClpbQ60649 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.31■□□□□ 0.52
ClpbQ60649 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
ClpbQ60649 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ClpbQ60649 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC18.3■□□□□ 0.52
ClpbQ60649 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ClpbQ60649 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
ClpbQ60649 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ClpbQ60649 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ClpbQ60649 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms