Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 AA386476-201ENSMUST00000098781 1665 ntBASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col27a1Q5QNQ9 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.92■□□□□ 0.62
Col27a1Q5QNQ9 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.91■□□□□ 0.62
Col27a1Q5QNQ9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col27a1Q5QNQ9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col27a1Q5QNQ9 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Gm5417-201ENSMUST00000079706 384 ntBASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col27a1Q5QNQ9 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
Col27a1Q5QNQ9 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col27a1Q5QNQ9 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC18.89■□□□□ 0.61
Col27a1Q5QNQ9 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.89■□□□□ 0.61
Col27a1Q5QNQ9 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col27a1Q5QNQ9 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
Col27a1Q5QNQ9 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col27a1Q5QNQ9 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col27a1Q5QNQ9 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col27a1Q5QNQ9 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC18.87■□□□□ 0.61
Col27a1Q5QNQ9 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.87■□□□□ 0.61
Col27a1Q5QNQ9 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col27a1Q5QNQ9 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.87■□□□□ 0.61
Col27a1Q5QNQ9 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC18.87■□□□□ 0.61
Col27a1Q5QNQ9 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Gm7367-201ENSMUST00000057611 492 ntBASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Gm10459-201ENSMUST00000202708 1155 ntBASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
Col27a1Q5QNQ9 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
Col27a1Q5QNQ9 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Col27a1Q5QNQ9 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms