Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Upf3bQ3ULL6 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3bQ3ULL6 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3bQ3ULL6 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3bQ3ULL6 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Upf3bQ3ULL6 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3bQ3ULL6 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3bQ3ULL6 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3bQ3ULL6 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Upf3bQ3ULL6 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
Upf3bQ3ULL6 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Upf3bQ3ULL6 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3bQ3ULL6 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3bQ3ULL6 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3bQ3ULL6 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.51■□□□□ 0.87
Upf3bQ3ULL6 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3bQ3ULL6 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf3bQ3ULL6 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf3bQ3ULL6 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.5■□□□□ 0.87
Upf3bQ3ULL6 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Upf3bQ3ULL6 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Upf3bQ3ULL6 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3bQ3ULL6 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3bQ3ULL6 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Upf3bQ3ULL6 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC20.48■□□□□ 0.87
Upf3bQ3ULL6 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3bQ3ULL6 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.48■□□□□ 0.87
Upf3bQ3ULL6 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.48■□□□□ 0.87
Upf3bQ3ULL6 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3bQ3ULL6 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Upf3bQ3ULL6 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3bQ3ULL6 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.45■□□□□ 0.86
Upf3bQ3ULL6 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.45■□□□□ 0.86
Upf3bQ3ULL6 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.45■□□□□ 0.86
Upf3bQ3ULL6 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3bQ3ULL6 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3bQ3ULL6 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3bQ3ULL6 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3bQ3ULL6 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms