Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.38■□□□□ 0.85
Shmt1P50431 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
Shmt1P50431 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Shmt1P50431 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.37■□□□□ 0.85
Shmt1P50431 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Shmt1P50431 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Shmt1P50431 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.37■□□□□ 0.85
Shmt1P50431 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt1P50431 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt1P50431 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.36■□□□□ 0.85
Shmt1P50431 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.36■□□□□ 0.85
Shmt1P50431 AV356131-201ENSMUST00000206201 750 ntBASIC20.36■□□□□ 0.85
Shmt1P50431 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt1P50431 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt1P50431 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Shmt1P50431 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt1P50431 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.35■□□□□ 0.85
Shmt1P50431 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt1P50431 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt1P50431 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt1P50431 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.35■□□□□ 0.85
Shmt1P50431 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.35■□□□□ 0.85
Shmt1P50431 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt1P50431 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt1P50431 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt1P50431 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.34■□□□□ 0.85
Shmt1P50431 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Shmt1P50431 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.34■□□□□ 0.85
Shmt1P50431 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.34■□□□□ 0.85
Shmt1P50431 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Shmt1P50431 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Shmt1P50431 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt1P50431 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Shmt1P50431 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
Shmt1P50431 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.33■□□□□ 0.85
Shmt1P50431 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Shmt1P50431 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Shmt1P50431 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.33■□□□□ 0.85
Shmt1P50431 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.33■□□□□ 0.85
Shmt1P50431 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Shmt1P50431 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Shmt1P50431 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Shmt1P50431 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Shmt1P50431 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Shmt1P50431 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
Shmt1P50431 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Shmt1P50431 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt1P50431 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt1P50431 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.32■□□□□ 0.84
Shmt1P50431 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.32■□□□□ 0.84
Shmt1P50431 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt1P50431 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Shmt1P50431 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt1P50431 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt1P50431 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt1P50431 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Shmt1P50431 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 Golph3-202ENSMUST00000226517 2359 ntBASIC20.31■□□□□ 0.84
Shmt1P50431 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 Gm7860-201ENSMUST00000121190 879 ntBASIC20.31■□□□□ 0.84
Shmt1P50431 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Shmt1P50431 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.31■□□□□ 0.84
Shmt1P50431 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.31■□□□□ 0.84
Shmt1P50431 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Shmt1P50431 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt1P50431 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt1P50431 Gm13146-201ENSMUST00000118508 780 ntBASIC20.3■□□□□ 0.84
Shmt1P50431 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt1P50431 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt1P50431 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.3■□□□□ 0.84
Shmt1P50431 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt1P50431 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Shmt1P50431 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms