Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.4■□□□□ 0.38
Lmx1bO88609 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Lmx1bO88609 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Lmx1bO88609 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Lmx1bO88609 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lmx1bO88609 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Gm13234-201ENSMUST00000120010 747 ntBASIC17.39■□□□□ 0.37
Lmx1bO88609 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.39■□□□□ 0.37
Lmx1bO88609 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.39■□□□□ 0.37
Lmx1bO88609 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.39■□□□□ 0.37
Lmx1bO88609 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lmx1bO88609 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lmx1bO88609 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.38■□□□□ 0.37
Lmx1bO88609 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.38■□□□□ 0.37
Lmx1bO88609 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lmx1bO88609 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lmx1bO88609 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lmx1bO88609 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lmx1bO88609 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lmx1bO88609 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Lmx1bO88609 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Lmx1bO88609 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Lmx1bO88609 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.37■□□□□ 0.37
Lmx1bO88609 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Lmx1bO88609 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Lmx1bO88609 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.36■□□□□ 0.37
Lmx1bO88609 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lmx1bO88609 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.36■□□□□ 0.37
Lmx1bO88609 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.36■□□□□ 0.37
Lmx1bO88609 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Lmx1bO88609 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lmx1bO88609 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Lmx1bO88609 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lmx1bO88609 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lmx1bO88609 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.35■□□□□ 0.37
Lmx1bO88609 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lmx1bO88609 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.35■□□□□ 0.37
Lmx1bO88609 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Lmx1bO88609 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lmx1bO88609 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.35■□□□□ 0.37
Lmx1bO88609 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Lmx1bO88609 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lmx1bO88609 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.35■□□□□ 0.37
Lmx1bO88609 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Lmx1bO88609 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lmx1bO88609 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lmx1bO88609 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lmx1bO88609 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Lmx1bO88609 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lmx1bO88609 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
Lmx1bO88609 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.34■□□□□ 0.37
Lmx1bO88609 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lmx1bO88609 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lmx1bO88609 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lmx1bO88609 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lmx1bO88609 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Lmx1bO88609 AA386476-201ENSMUST00000098781 1665 ntBASIC17.33■□□□□ 0.37
Lmx1bO88609 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Lmx1bO88609 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lmx1bO88609 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lmx1bO88609 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lmx1bO88609 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lmx1bO88609 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Lmx1bO88609 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
Lmx1bO88609 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Lmx1bO88609 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lmx1bO88609 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lmx1bO88609 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lmx1bO88609 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms