Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
Hmgb3O54879 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Hmgb3O54879 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Hmgb3O54879 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Hmgb3O54879 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Hmgb3O54879 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.93■□□□□ 0.14
Hmgb3O54879 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
Hmgb3O54879 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Hmgb3O54879 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Hmgb3O54879 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Hmgb3O54879 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Hmgb3O54879 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Hmgb3O54879 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Hmgb3O54879 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC15.92■□□□□ 0.14
Hmgb3O54879 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Hmgb3O54879 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb3O54879 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Hmgb3O54879 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Hmgb3O54879 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC15.91■□□□□ 0.14
Hmgb3O54879 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC15.91■□□□□ 0.14
Hmgb3O54879 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb3O54879 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 Gm38342-201ENSMUST00000195710 2980 ntBASIC15.9■□□□□ 0.14
Hmgb3O54879 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC15.9■□□□□ 0.14
Hmgb3O54879 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Hmgb3O54879 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb3O54879 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Hmgb3O54879 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Hmgb3O54879 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Hmgb3O54879 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb3O54879 Gm10620-201ENSMUST00000098379 1332 ntBASIC15.89■□□□□ 0.13
Hmgb3O54879 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Hmgb3O54879 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb3O54879 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
Hmgb3O54879 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Hmgb3O54879 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Hmgb3O54879 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Hmgb3O54879 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Hmgb3O54879 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Hmgb3O54879 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Hmgb3O54879 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC15.87■□□□□ 0.13
Hmgb3O54879 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Hmgb3O54879 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Hmgb3O54879 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Hmgb3O54879 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Hmgb3O54879 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms