Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Clk3O35492 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk3O35492 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Clk3O35492 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Clk3O35492 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk3O35492 Gm21956-201ENSMUST00000179946 522 ntBASIC18.18■□□□□ 0.5
Clk3O35492 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Clk3O35492 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk3O35492 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Clk3O35492 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Clk3O35492 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk3O35492 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk3O35492 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clk3O35492 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Clk3O35492 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Clk3O35492 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Clk3O35492 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Clk3O35492 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Clk3O35492 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Clk3O35492 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.17■□□□□ 0.5
Clk3O35492 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC18.17■□□□□ 0.5
Clk3O35492 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.17■□□□□ 0.5
Clk3O35492 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC18.17■□□□□ 0.5
Clk3O35492 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk3O35492 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
Clk3O35492 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk3O35492 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk3O35492 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clk3O35492 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.16■□□□□ 0.5
Clk3O35492 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Clk3O35492 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Clk3O35492 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.16■□□□□ 0.5
Clk3O35492 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Clk3O35492 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clk3O35492 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Clk3O35492 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Clk3O35492 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Gm43137-201ENSMUST00000198052 594 ntBASIC18.15■□□□□ 0.5
Clk3O35492 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Clk3O35492 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
Clk3O35492 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clk3O35492 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.14■□□□□ 0.5
Clk3O35492 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Clk3O35492 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.14■□□□□ 0.49
Clk3O35492 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.14■□□□□ 0.49
Clk3O35492 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Clk3O35492 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.14■□□□□ 0.49
Clk3O35492 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Clk3O35492 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clk3O35492 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Clk3O35492 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.13■□□□□ 0.49
Clk3O35492 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.13■□□□□ 0.49
Clk3O35492 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clk3O35492 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.13■□□□□ 0.49
Clk3O35492 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Clk3O35492 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clk3O35492 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clk3O35492 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms