Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav11A0A0B4J1J9 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trav11A0A0B4J1J9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Gm5921-201ENSMUST00000075898 882 ntBASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC13.17□□□□□ -0.3
Trav11A0A0B4J1J9 Gm20100-201ENSMUST00000209418 2272 ntBASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 AC126028.2-201ENSMUST00000228100 1833 ntBASIC13.16□□□□□ -0.3
Trav11A0A0B4J1J9 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Cap2-205ENSMUST00000225824 1634 ntBASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Gm43231-201ENSMUST00000202960 2258 ntBASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trav11A0A0B4J1J9 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Trav11A0A0B4J1J9 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Gm40881-201ENSMUST00000223397 166 ntBASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trav11A0A0B4J1J9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Gm43530-201ENSMUST00000195920 274 ntBASIC13.13□□□□□ -0.31
Trav11A0A0B4J1J9 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms