Protein–RNA interactions for Protein: Q9D2H5

Trim42, Tripartite motif-containing protein 42, mousemouse

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim42Q9D2H5 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim42Q9D2H5 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim42Q9D2H5 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim42Q9D2H5 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim42Q9D2H5 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim42Q9D2H5 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim42Q9D2H5 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim42Q9D2H5 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Trim42Q9D2H5 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim42Q9D2H5 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 AC154231.1-201ENSMUST00000220564 2175 ntBASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim42Q9D2H5 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim42Q9D2H5 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim42Q9D2H5 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim42Q9D2H5 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trim42Q9D2H5 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim42Q9D2H5 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms