Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clrn1Q8K445 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clrn1Q8K445 Gm11421-201ENSMUST00000122124 294 ntBASIC18.19■□□□□ 0.5
Clrn1Q8K445 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.19■□□□□ 0.5
Clrn1Q8K445 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Clrn1Q8K445 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Clrn1Q8K445 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Clrn1Q8K445 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clrn1Q8K445 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clrn1Q8K445 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clrn1Q8K445 Golph3-202ENSMUST00000226517 2359 ntBASIC18.18■□□□□ 0.5
Clrn1Q8K445 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Clrn1Q8K445 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clrn1Q8K445 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Clrn1Q8K445 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn1Q8K445 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn1Q8K445 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Clrn1Q8K445 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Gm26833-201ENSMUST00000180899 440 ntBASIC18.16■□□□□ 0.5
Clrn1Q8K445 AC137127.1-201ENSMUST00000213466 1078 ntBASIC18.16■□□□□ 0.5
Clrn1Q8K445 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Clrn1Q8K445 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn1Q8K445 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Gm40848-201ENSMUST00000221998 324 ntBASIC18.15■□□□□ 0.5
Clrn1Q8K445 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clrn1Q8K445 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clrn1Q8K445 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Clrn1Q8K445 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clrn1Q8K445 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clrn1Q8K445 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.14■□□□□ 0.49
Clrn1Q8K445 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.14■□□□□ 0.49
Clrn1Q8K445 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clrn1Q8K445 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.12■□□□□ 0.49
Clrn1Q8K445 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.11■□□□□ 0.49
Clrn1Q8K445 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Clrn1Q8K445 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Clrn1Q8K445 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.1■□□□□ 0.49
Clrn1Q8K445 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clrn1Q8K445 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms