Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Trim9Q8C7M3 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Trim9Q8C7M3 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
Trim9Q8C7M3 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
Trim9Q8C7M3 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Trim9Q8C7M3 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Trim9Q8C7M3 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Trim9Q8C7M3 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
Trim9Q8C7M3 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim9Q8C7M3 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
Trim9Q8C7M3 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim9Q8C7M3 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim9Q8C7M3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.31■■□□□ 1
Trim9Q8C7M3 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim9Q8C7M3 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Trim9Q8C7M3 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Trim9Q8C7M3 Gm43017-201ENSMUST00000198296 752 ntBASIC21.31■■□□□ 1
Trim9Q8C7M3 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim9Q8C7M3 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim9Q8C7M3 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Trim9Q8C7M3 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.3■■□□□ 1
Trim9Q8C7M3 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Trim9Q8C7M3 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim9Q8C7M3 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
Trim9Q8C7M3 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.3■■□□□ 1
Trim9Q8C7M3 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.3■■□□□ 1
Trim9Q8C7M3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim9Q8C7M3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Trim9Q8C7M3 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim9Q8C7M3 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim9Q8C7M3 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.29■■□□□ 1
Trim9Q8C7M3 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim9Q8C7M3 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trim9Q8C7M3 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.29■■□□□ 1
Trim9Q8C7M3 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim9Q8C7M3 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim9Q8C7M3 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Trim9Q8C7M3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Trim9Q8C7M3 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.28■■□□□ 1
Trim9Q8C7M3 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.28■■□□□ 1
Trim9Q8C7M3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim9Q8C7M3 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trim9Q8C7M3 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim9Q8C7M3 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim9Q8C7M3 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Trim9Q8C7M3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Trim9Q8C7M3 Gm26833-201ENSMUST00000180899 440 ntBASIC21.27■■□□□ 1
Trim9Q8C7M3 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim9Q8C7M3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim9Q8C7M3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim9Q8C7M3 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim9Q8C7M3 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Gm40848-201ENSMUST00000221998 324 ntBASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim9Q8C7M3 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim9Q8C7M3 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim9Q8C7M3 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms