Protein–RNA interactions for Protein: Q8BM39

Prpf18, Pre-mRNA-splicing factor 18, mousemouse

Predictions only

Length 342 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf18Q8BM39 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf18Q8BM39 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Prpf18Q8BM39 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf18Q8BM39 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf18Q8BM39 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf18Q8BM39 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf18Q8BM39 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.27■□□□□ 0.52
Prpf18Q8BM39 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Prpf18Q8BM39 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.27■□□□□ 0.52
Prpf18Q8BM39 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Prpf18Q8BM39 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Prpf18Q8BM39 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Prpf18Q8BM39 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Gm7417-201ENSMUST00000192950 473 ntBASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.26■□□□□ 0.51
Prpf18Q8BM39 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Etf1-202ENSMUST00000180351 108 ntBASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Prpf18Q8BM39 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Prpf18Q8BM39 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Prpf18Q8BM39 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Prpf18Q8BM39 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Gm9959-201ENSMUST00000068277 390 ntBASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Prpf18Q8BM39 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Prpf18Q8BM39 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Prpf18Q8BM39 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms