Protein–RNA interactions for Protein: Q80XJ3

Ttc28, Tetratricopeptide repeat protein 28, mousemouse

Predictions only

Length 2,450 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ttc28Q80XJ3 Gm10819-201ENSMUST00000099988 561 ntBASIC16.34■□□□□ 0.21
Ttc28Q80XJ3 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ttc28Q80XJ3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ttc28Q80XJ3 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ttc28Q80XJ3 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.34■□□□□ 0.21
Ttc28Q80XJ3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.34■□□□□ 0.21
Ttc28Q80XJ3 Gm43909-201ENSMUST00000203443 1876 ntBASIC16.33■□□□□ 0.21
Ttc28Q80XJ3 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ttc28Q80XJ3 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Ttc28Q80XJ3 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ttc28Q80XJ3 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC16.33■□□□□ 0.21
Ttc28Q80XJ3 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Ttc28Q80XJ3 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ttc28Q80XJ3 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ttc28Q80XJ3 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Gm2559-201ENSMUST00000201323 363 ntBASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Gm12896-201ENSMUST00000118430 226 ntBASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ttc28Q80XJ3 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 AA386476-201ENSMUST00000098781 1665 ntBASIC16.29■□□□□ 0.2
Ttc28Q80XJ3 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ttc28Q80XJ3 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ttc28Q80XJ3 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ttc28Q80XJ3 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ttc28Q80XJ3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Gm37055-201ENSMUST00000191866 133 ntBASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Gm11643-201ENSMUST00000119578 864 ntBASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Ttc28Q80XJ3 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms