Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Ift88Q61371 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Ift88Q61371 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Ift88Q61371 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.31■■□□□ 1
Ift88Q61371 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ift88Q61371 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ift88Q61371 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ift88Q61371 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ift88Q61371 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ift88Q61371 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
Ift88Q61371 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ift88Q61371 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ift88Q61371 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Ift88Q61371 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ift88Q61371 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Ift88Q61371 Gm18688-201ENSMUST00000204695 1859 ntBASIC21.29■■□□□ 1
Ift88Q61371 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC21.29■■□□□ 1
Ift88Q61371 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ift88Q61371 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.29■■□□□ 1
Ift88Q61371 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.29■■□□□ 1
Ift88Q61371 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ift88Q61371 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Ift88Q61371 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC21.28■■□□□ 1
Ift88Q61371 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ift88Q61371 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ift88Q61371 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ift88Q61371 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.28■■□□□ 1
Ift88Q61371 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.28■■□□□ 1
Ift88Q61371 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ift88Q61371 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
Ift88Q61371 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ift88Q61371 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Ift88Q61371 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
Ift88Q61371 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
Ift88Q61371 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ift88Q61371 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ift88Q61371 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.26■□□□□ 0.99
Ift88Q61371 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ift88Q61371 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ift88Q61371 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Ift88Q61371 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.26■□□□□ 0.99
Ift88Q61371 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.26■□□□□ 0.99
Ift88Q61371 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ift88Q61371 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ift88Q61371 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ift88Q61371 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ift88Q61371 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Ift88Q61371 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.25■□□□□ 0.99
Ift88Q61371 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Gm14117-201ENSMUST00000122417 843 ntBASIC21.25■□□□□ 0.99
Ift88Q61371 Gm45102-201ENSMUST00000207427 857 ntBASIC21.25■□□□□ 0.99
Ift88Q61371 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.25■□□□□ 0.99
Ift88Q61371 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Ift88Q61371 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ift88Q61371 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.24■□□□□ 0.99
Ift88Q61371 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.24■□□□□ 0.99
Ift88Q61371 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ift88Q61371 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ift88Q61371 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.24■□□□□ 0.99
Ift88Q61371 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ift88Q61371 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ift88Q61371 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Ift88Q61371 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Ift88Q61371 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ift88Q61371 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ift88Q61371 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ift88Q61371 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Ift88Q61371 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ift88Q61371 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.23■□□□□ 0.99
Ift88Q61371 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Ift88Q61371 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ift88Q61371 BC021767-201ENSMUST00000126387 1716 ntBASIC21.22■□□□□ 0.99
Ift88Q61371 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms