Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
Limch1Q3UH68 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Limch1Q3UH68 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Limch1Q3UH68 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Limch1Q3UH68 Gm7291-201ENSMUST00000199147 382 ntBASIC22.67■■□□□ 1.22
Limch1Q3UH68 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Limch1Q3UH68 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Limch1Q3UH68 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Limch1Q3UH68 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Limch1Q3UH68 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Limch1Q3UH68 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Limch1Q3UH68 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC22.66■■□□□ 1.22
Limch1Q3UH68 Gm10209-201ENSMUST00000203397 1607 ntBASIC22.66■■□□□ 1.22
Limch1Q3UH68 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Limch1Q3UH68 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Limch1Q3UH68 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Limch1Q3UH68 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Limch1Q3UH68 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Limch1Q3UH68 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Limch1Q3UH68 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Limch1Q3UH68 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Limch1Q3UH68 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Limch1Q3UH68 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Limch1Q3UH68 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Limch1Q3UH68 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Limch1Q3UH68 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC22.64■■□□□ 1.21
Limch1Q3UH68 AC154266.1-201ENSMUST00000223190 503 ntBASIC22.64■■□□□ 1.21
Limch1Q3UH68 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Limch1Q3UH68 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Limch1Q3UH68 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Limch1Q3UH68 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Limch1Q3UH68 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Limch1Q3UH68 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Limch1Q3UH68 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
Limch1Q3UH68 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC22.63■■□□□ 1.21
Limch1Q3UH68 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Limch1Q3UH68 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Limch1Q3UH68 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Limch1Q3UH68 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Limch1Q3UH68 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC22.62■■□□□ 1.21
Limch1Q3UH68 Gm26571-201ENSMUST00000181399 666 ntBASIC22.62■■□□□ 1.21
Limch1Q3UH68 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Limch1Q3UH68 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Limch1Q3UH68 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Limch1Q3UH68 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Gm40848-201ENSMUST00000221998 324 ntBASIC22.61■■□□□ 1.21
Limch1Q3UH68 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Limch1Q3UH68 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC22.6■■□□□ 1.21
Limch1Q3UH68 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
Limch1Q3UH68 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Limch1Q3UH68 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Limch1Q3UH68 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Limch1Q3UH68 Gm27405-201ENSMUST00000184201 112 ntBASIC22.59■■□□□ 1.21
Limch1Q3UH68 Gm42569-201ENSMUST00000200539 472 ntBASIC22.59■■□□□ 1.21
Limch1Q3UH68 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Limch1Q3UH68 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
Limch1Q3UH68 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC22.58■■□□□ 1.21
Limch1Q3UH68 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 130.5 ms