Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Gm27032-201ENSMUST00000183124 1116 ntBASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Cdkn3-203ENSMUST00000227149 1952 ntBASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
Ddb1Q3U1J4 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Ddb1Q3U1J4 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Ddb1Q3U1J4 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
Ddb1Q3U1J4 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Ddb1Q3U1J4 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Ddb1Q3U1J4 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Ddb1Q3U1J4 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Ddb1Q3U1J4 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC24.74■■□□□ 1.55
Ddb1Q3U1J4 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ddb1Q3U1J4 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Ddb1Q3U1J4 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC24.73■■□□□ 1.55
Ddb1Q3U1J4 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ddb1Q3U1J4 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Ddb1Q3U1J4 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 AC153881.1-201ENSMUST00000214448 284 ntBASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC24.72■■□□□ 1.55
Ddb1Q3U1J4 Gm15043-201ENSMUST00000118843 1543 ntBASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
Ddb1Q3U1J4 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.55
Ddb1Q3U1J4 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Ddb1Q3U1J4 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.55
Ddb1Q3U1J4 Gm10698-201ENSMUST00000182663 604 ntBASIC24.7■■□□□ 1.54
Ddb1Q3U1J4 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Ddb1Q3U1J4 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Ddb1Q3U1J4 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Ddb1Q3U1J4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Ddb1Q3U1J4 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC24.7■■□□□ 1.54
Ddb1Q3U1J4 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Ddb1Q3U1J4 Gm11643-201ENSMUST00000119578 864 ntBASIC24.69■■□□□ 1.54
Ddb1Q3U1J4 Gm18666-201ENSMUST00000190039 958 ntBASIC24.69■■□□□ 1.54
Ddb1Q3U1J4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC24.69■■□□□ 1.54
Ddb1Q3U1J4 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Ddb1Q3U1J4 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Gm37055-201ENSMUST00000191866 133 ntBASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ddb1Q3U1J4 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Gm11249-201ENSMUST00000117071 859 ntBASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Ddb1Q3U1J4 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
Ddb1Q3U1J4 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Ddb1Q3U1J4 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Ddb1Q3U1J4 Gm9484-201ENSMUST00000195892 1159 ntBASIC24.66■■□□□ 1.54
Ddb1Q3U1J4 Nrn1-203ENSMUST00000223611 1443 ntBASIC24.66■■□□□ 1.54
Ddb1Q3U1J4 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Gm21596-201ENSMUST00000178049 1316 ntBASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
Ddb1Q3U1J4 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms