Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ptchd3Q0EEE2 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Ptchd3Q0EEE2 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ptchd3Q0EEE2 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ptchd3Q0EEE2 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ptchd3Q0EEE2 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.55■□□□□ 0.56
Ptchd3Q0EEE2 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Ptchd3Q0EEE2 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ptchd3Q0EEE2 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ptchd3Q0EEE2 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
Ptchd3Q0EEE2 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ptchd3Q0EEE2 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ptchd3Q0EEE2 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ptchd3Q0EEE2 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ptchd3Q0EEE2 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ptchd3Q0EEE2 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Ptchd3Q0EEE2 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Ptchd3Q0EEE2 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Ptchd3Q0EEE2 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ptchd3Q0EEE2 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Rarb-207ENSMUST00000225921 2756 ntBASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ptchd3Q0EEE2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ptchd3Q0EEE2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms