Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Shmt1P50431 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Shmt1P50431 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shmt1P50431 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shmt1P50431 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.47■□□□□ 0.87
Shmt1P50431 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Shmt1P50431 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
Shmt1P50431 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.46■□□□□ 0.87
Shmt1P50431 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shmt1P50431 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shmt1P50431 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shmt1P50431 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.45■□□□□ 0.86
Shmt1P50431 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.45■□□□□ 0.86
Shmt1P50431 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shmt1P50431 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shmt1P50431 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Shmt1P50431 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shmt1P50431 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Shmt1P50431 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.44■□□□□ 0.86
Shmt1P50431 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Shmt1P50431 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.44■□□□□ 0.86
Shmt1P50431 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.44■□□□□ 0.86
Shmt1P50431 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.44■□□□□ 0.86
Shmt1P50431 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shmt1P50431 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Shmt1P50431 Gm10849-201ENSMUST00000100397 618 ntBASIC20.43■□□□□ 0.86
Shmt1P50431 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.43■□□□□ 0.86
Shmt1P50431 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shmt1P50431 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shmt1P50431 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Shmt1P50431 Gm42778-201ENSMUST00000199644 553 ntBASIC20.43■□□□□ 0.86
Shmt1P50431 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.43■□□□□ 0.86
Shmt1P50431 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.43■□□□□ 0.86
Shmt1P50431 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shmt1P50431 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt1P50431 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt1P50431 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt1P50431 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt1P50431 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt1P50431 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt1P50431 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.42■□□□□ 0.86
Shmt1P50431 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt1P50431 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.41■□□□□ 0.86
Shmt1P50431 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt1P50431 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Shmt1P50431 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt1P50431 Gm13234-201ENSMUST00000120010 747 ntBASIC20.41■□□□□ 0.86
Shmt1P50431 Gm27405-201ENSMUST00000184201 112 ntBASIC20.41■□□□□ 0.86
Shmt1P50431 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt1P50431 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt1P50431 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt1P50431 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt1P50431 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt1P50431 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
Shmt1P50431 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Shmt1P50431 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Gm38205-201ENSMUST00000192243 258 ntBASIC20.4■□□□□ 0.86
Shmt1P50431 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt1P50431 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Shmt1P50431 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Shmt1P50431 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.39■□□□□ 0.86
Shmt1P50431 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Shmt1P50431 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
Shmt1P50431 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt1P50431 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Shmt1P50431 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt1P50431 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt1P50431 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt1P50431 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.39■□□□□ 0.85
Shmt1P50431 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.39■□□□□ 0.85
Shmt1P50431 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt1P50431 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Shmt1P50431 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
Shmt1P50431 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.38■□□□□ 0.85
Shmt1P50431 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Shmt1P50431 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.38■□□□□ 0.85
Shmt1P50431 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt1P50431 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.38■□□□□ 0.85
Shmt1P50431 Gm18671-201ENSMUST00000214826 683 ntBASIC20.38■□□□□ 0.85
Shmt1P50431 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms