Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Cdx2P43241 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdx2P43241 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.43■□□□□ 0.54
Cdx2P43241 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdx2P43241 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdx2P43241 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdx2P43241 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdx2P43241 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdx2P43241 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Cdx2P43241 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Cdx2P43241 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.42■□□□□ 0.54
Cdx2P43241 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
Cdx2P43241 Gm26524-201ENSMUST00000192339 390 ntBASIC18.42■□□□□ 0.54
Cdx2P43241 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.42■□□□□ 0.54
Cdx2P43241 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdx2P43241 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdx2P43241 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Cdx2P43241 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx2P43241 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Cdx2P43241 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC18.41■□□□□ 0.54
Cdx2P43241 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx2P43241 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx2P43241 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC18.41■□□□□ 0.54
Cdx2P43241 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Cdx2P43241 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Cdx2P43241 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx2P43241 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Cdx2P43241 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC18.4■□□□□ 0.54
Cdx2P43241 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.4■□□□□ 0.54
Cdx2P43241 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 AC131586.2-201ENSMUST00000228370 1512 ntBASIC18.4■□□□□ 0.54
Cdx2P43241 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Cdx2P43241 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 Mir7071-201ENSMUST00000184847 69 ntBASIC18.4■□□□□ 0.54
Cdx2P43241 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 Rab3c-203ENSMUST00000224180 967 ntBASIC18.4■□□□□ 0.54
Cdx2P43241 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Cdx2P43241 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Cdx2P43241 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.4■□□□□ 0.54
Cdx2P43241 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC18.4■□□□□ 0.54
Cdx2P43241 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Cdx2P43241 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Cdx2P43241 Gm37563-201ENSMUST00000192580 1513 ntBASIC18.39■□□□□ 0.54
Cdx2P43241 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.39■□□□□ 0.53
Cdx2P43241 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.39■□□□□ 0.53
Cdx2P43241 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx2P43241 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Cdx2P43241 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx2P43241 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx2P43241 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx2P43241 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Cdx2P43241 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Cdx2P43241 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.38■□□□□ 0.53
Cdx2P43241 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.38■□□□□ 0.53
Cdx2P43241 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Cdx2P43241 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Cdx2P43241 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cdx2P43241 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx2P43241 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Cdx2P43241 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx2P43241 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
Cdx2P43241 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Cdx2P43241 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx2P43241 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx2P43241 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx2P43241 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cdx2P43241 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.37■□□□□ 0.53
Cdx2P43241 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Cdx2P43241 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cdx2P43241 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx2P43241 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx2P43241 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx2P43241 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cdx2P43241 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Cdx2P43241 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Cdx2P43241 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Cdx2P43241 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.35■□□□□ 0.53
Cdx2P43241 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms