Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Chmp6P0C0A3 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Smad6-203ENSMUST00000179458 273 ntBASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Chmp6P0C0A3 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Gm21168-201ENSMUST00000199646 1096 ntBASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.92■□□□□ 0.94
Chmp6P0C0A3 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Chmp6P0C0A3 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Chmp6P0C0A3 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Chmp6P0C0A3 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.89■□□□□ 0.94
Chmp6P0C0A3 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Chmp6P0C0A3 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Chmp6P0C0A3 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.89■□□□□ 0.94
Chmp6P0C0A3 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Gm11421-201ENSMUST00000122124 294 ntBASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Chmp6P0C0A3 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Chmp6P0C0A3 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Chmp6P0C0A3 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Gm43060-201ENSMUST00000200621 289 ntBASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.86■□□□□ 0.93
Chmp6P0C0A3 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chmp6P0C0A3 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Chmp6P0C0A3 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Chmp6P0C0A3 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms