Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.61■■□□□ 1.05
Pcdha4O88689 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Pcdha4O88689 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Pcdha4O88689 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdha4O88689 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.6■■□□□ 1.05
Pcdha4O88689 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Gm9988-201ENSMUST00000069786 435 ntBASIC21.6■■□□□ 1.05
Pcdha4O88689 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdha4O88689 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdha4O88689 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Pcdha4O88689 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdha4O88689 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdha4O88689 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
Pcdha4O88689 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdha4O88689 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdha4O88689 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdha4O88689 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pcdha4O88689 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.58■■□□□ 1.05
Pcdha4O88689 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pcdha4O88689 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC21.58■■□□□ 1.05
Pcdha4O88689 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.05
Pcdha4O88689 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pcdha4O88689 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pcdha4O88689 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC21.58■■□□□ 1.04
Pcdha4O88689 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.57■■□□□ 1.04
Pcdha4O88689 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Pcdha4O88689 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pcdha4O88689 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Pcdha4O88689 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Pcdha4O88689 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.57■■□□□ 1.04
Pcdha4O88689 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pcdha4O88689 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Pcdha4O88689 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pcdha4O88689 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Pcdha4O88689 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.56■■□□□ 1.04
Pcdha4O88689 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Pcdha4O88689 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Pcdha4O88689 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.55■■□□□ 1.04
Pcdha4O88689 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Pcdha4O88689 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC21.55■■□□□ 1.04
Pcdha4O88689 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.55■■□□□ 1.04
Pcdha4O88689 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.55■■□□□ 1.04
Pcdha4O88689 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pcdha4O88689 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.54■■□□□ 1.04
Pcdha4O88689 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Pcdha4O88689 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdha4O88689 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdha4O88689 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Pcdha4O88689 Reep4-203ENSMUST00000226563 1444 ntBASIC21.54■■□□□ 1.04
Pcdha4O88689 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdha4O88689 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pcdha4O88689 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Pcdha4O88689 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdha4O88689 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdha4O88689 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Pcdha4O88689 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdha4O88689 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.53■■□□□ 1.04
Pcdha4O88689 Gm42778-201ENSMUST00000199644 553 ntBASIC21.53■■□□□ 1.04
Pcdha4O88689 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Pcdha4O88689 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Pcdha4O88689 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdha4O88689 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdha4O88689 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.53■■□□□ 1.04
Pcdha4O88689 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Pcdha4O88689 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Pcdha4O88689 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
Pcdha4O88689 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.52■■□□□ 1.04
Pcdha4O88689 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Pcdha4O88689 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
Pcdha4O88689 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pcdha4O88689 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms