Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clk3O35492 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clk3O35492 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clk3O35492 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.27■□□□□ 0.52
Clk3O35492 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.27■□□□□ 0.52
Clk3O35492 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clk3O35492 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clk3O35492 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clk3O35492 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Clk3O35492 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Clk3O35492 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Clk3O35492 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clk3O35492 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clk3O35492 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.26■□□□□ 0.51
Clk3O35492 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clk3O35492 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Clk3O35492 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clk3O35492 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Clk3O35492 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Clk3O35492 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Clk3O35492 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Clk3O35492 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Clk3O35492 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.25■□□□□ 0.51
Clk3O35492 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Clk3O35492 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.25■□□□□ 0.51
Clk3O35492 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Clk3O35492 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Clk3O35492 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Clk3O35492 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Clk3O35492 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Clk3O35492 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Clk3O35492 Gm12821-201ENSMUST00000120022 600 ntBASIC18.24■□□□□ 0.51
Clk3O35492 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.24■□□□□ 0.51
Clk3O35492 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Clk3O35492 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Clk3O35492 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Clk3O35492 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.24■□□□□ 0.51
Clk3O35492 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Clk3O35492 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Clk3O35492 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.23■□□□□ 0.51
Clk3O35492 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.23■□□□□ 0.51
Clk3O35492 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.23■□□□□ 0.51
Clk3O35492 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.23■□□□□ 0.51
Clk3O35492 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Clk3O35492 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Clk3O35492 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Clk3O35492 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Clk3O35492 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Clk3O35492 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Clk3O35492 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.22■□□□□ 0.51
Clk3O35492 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Clk3O35492 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Clk3O35492 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Clk3O35492 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Clk3O35492 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Clk3O35492 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Clk3O35492 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Clk3O35492 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Clk3O35492 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Clk3O35492 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Clk3O35492 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Clk3O35492 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Clk3O35492 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Clk3O35492 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Clk3O35492 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Clk3O35492 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.2■□□□□ 0.5
Clk3O35492 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Clk3O35492 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Clk3O35492 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.19■□□□□ 0.5
Clk3O35492 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Clk3O35492 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.19■□□□□ 0.5
Clk3O35492 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.19■□□□□ 0.5
Clk3O35492 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Clk3O35492 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.19■□□□□ 0.5
Clk3O35492 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
Clk3O35492 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Clk3O35492 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms