Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Scn11aQ9R053 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Scn11aQ9R053 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
Scn11aQ9R053 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Scn11aQ9R053 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Scn11aQ9R053 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC23.34■■□□□ 1.33
Scn11aQ9R053 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Scn11aQ9R053 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Scn11aQ9R053 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC23.33■■□□□ 1.33
Scn11aQ9R053 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Scn11aQ9R053 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Scn11aQ9R053 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC23.33■■□□□ 1.33
Scn11aQ9R053 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
Scn11aQ9R053 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Scn11aQ9R053 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Scn11aQ9R053 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Scn11aQ9R053 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Scn11aQ9R053 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Scn11aQ9R053 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Scn11aQ9R053 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC23.32■■□□□ 1.32
Scn11aQ9R053 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
Scn11aQ9R053 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Scn11aQ9R053 Gm6211-202ENSMUST00000167849 925 ntBASIC23.31■■□□□ 1.32
Scn11aQ9R053 Gm6420-201ENSMUST00000193885 723 ntBASIC23.31■■□□□ 1.32
Scn11aQ9R053 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC23.31■■□□□ 1.32
Scn11aQ9R053 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
Scn11aQ9R053 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Scn11aQ9R053 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Scn11aQ9R053 Mir5133-201ENSMUST00000174955 77 ntBASIC23.3■■□□□ 1.32
Scn11aQ9R053 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC23.3■■□□□ 1.32
Scn11aQ9R053 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Scn11aQ9R053 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Scn11aQ9R053 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
Scn11aQ9R053 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
Scn11aQ9R053 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Scn11aQ9R053 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Scn11aQ9R053 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Scn11aQ9R053 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Scn11aQ9R053 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
Scn11aQ9R053 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Scn11aQ9R053 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Scn11aQ9R053 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Scn11aQ9R053 Gm12527-201ENSMUST00000117967 564 ntBASIC23.27■■□□□ 1.32
Scn11aQ9R053 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Scn11aQ9R053 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Scn11aQ9R053 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Scn11aQ9R053 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Scn11aQ9R053 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC23.26■■□□□ 1.31
Scn11aQ9R053 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Scn11aQ9R053 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Scn11aQ9R053 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Scn11aQ9R053 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Scn11aQ9R053 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
Scn11aQ9R053 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
Scn11aQ9R053 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Scn11aQ9R053 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Scn11aQ9R053 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
Scn11aQ9R053 Gm8520-201ENSMUST00000186517 868 ntBASIC23.24■■□□□ 1.31
Scn11aQ9R053 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Scn11aQ9R053 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Scn11aQ9R053 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Scn11aQ9R053 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Scn11aQ9R053 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Scn11aQ9R053 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Scn11aQ9R053 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Scn11aQ9R053 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Scn11aQ9R053 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC23.22■■□□□ 1.31
Scn11aQ9R053 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Scn11aQ9R053 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC23.22■■□□□ 1.31
Scn11aQ9R053 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Scn11aQ9R053 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Scn11aQ9R053 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms