Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.37■□□□□ 0.85
Ddx56Q9D0R4 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ddx56Q9D0R4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ddx56Q9D0R4 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Ddx56Q9D0R4 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ddx56Q9D0R4 Gm6139-201ENSMUST00000079261 882 ntBASIC20.35■□□□□ 0.85
Ddx56Q9D0R4 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Ddx56Q9D0R4 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Smad6-203ENSMUST00000179458 273 ntBASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ddx56Q9D0R4 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx56Q9D0R4 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx56Q9D0R4 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx56Q9D0R4 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx56Q9D0R4 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
Ddx56Q9D0R4 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Ddx56Q9D0R4 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.33■□□□□ 0.85
Ddx56Q9D0R4 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ddx56Q9D0R4 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Ddx56Q9D0R4 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx56Q9D0R4 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.32■□□□□ 0.84
Ddx56Q9D0R4 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx56Q9D0R4 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx56Q9D0R4 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.32■□□□□ 0.84
Ddx56Q9D0R4 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx56Q9D0R4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ddx56Q9D0R4 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx56Q9D0R4 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx56Q9D0R4 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Ddx56Q9D0R4 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx56Q9D0R4 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx56Q9D0R4 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx56Q9D0R4 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ddx56Q9D0R4 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.3■□□□□ 0.84
Ddx56Q9D0R4 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 Gm11421-201ENSMUST00000122124 294 ntBASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ddx56Q9D0R4 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Ddx56Q9D0R4 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ddx56Q9D0R4 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
Ddx56Q9D0R4 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
Ddx56Q9D0R4 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms